Subpar reporting of pre‐analytical variables in RNA‐focused blood plasma studies

Abstract

Extracellular RNA (cell‐free RNA; exRNA) from blood‐derived liquid biopsies is an appealing, minimally invasive source of disease biomarkers. As pre‐analytical variables strongly influence exRNA measurements, their reporting is essential for meaningful interpretation and replication of results. The aim of this review was to chart to what extent pre‐analytical variables are documented, to pinpoint shortcomings and to improve future reporting. In total, 200 blood plasma exRNA studies published in 2018 or 2023 were reviewed for annotation of 22 variables associated with blood collection, plasma preparation, and RNA purification. Our results show that pre‐analytical variables are poorly documented, with only three out of 22 variables described in over half of the publications. The percentage of variables reported ranged from 4.6% to 54.6% (mean 24.84%) in 2023 and from 4.6% to 57.1% (mean 28.60%) in 2018. Recommendations and guidelines (i.e., BRISQ, ASCO‐CAP, BloodPAC, PPMPT, and CEN standards) have currently not resulted in improved reporting. In conclusion, our results highlight the lack of reporting pre‐analytical variables in exRNA studies and advocate for a consistent use of available standards, endorsed by funders and journals.

Publication
Molecular Oncology
Francisco Avila Cobos
Francisco Avila Cobos
PostDoctoral Fellow (10/2014-02/2022)

the “deconvolution” guy

Jill Deleu
Jill Deleu
PostDoctoral Fellow
Eva Hulstaert
Eva Hulstaert
Doctoral Fellow (10/2017-09/2021)

Dermatology resident with an interest in fundamental and translational research

Annelien Morlion
Annelien Morlion
PostDoctoral Fellow
Elena Ramos Varas
Elena Ramos Varas
Doctoral Fellow
Kathleen Schoofs
Kathleen Schoofs
PostDoctoral Fellow
Wim Trypsteen
Wim Trypsteen
PostDoctoral Fellow
Eveline Vanden Eynde
Eveline Vanden Eynde
Lab Technician
Hanne Van Droogenbroeck
Hanne Van Droogenbroeck
Doctoral Fellow
Kimberly Verniers
Kimberly Verniers
Lab Technician
Jo Vandesompele
Jo Vandesompele
Professor

RNA addict trying to connect all the dots

Anneleen Decock
Anneleen Decock
PostDoctoral Fellow

Working with extracellular RNA of liquid biopsies in cancer